Equilibrium and irreversible unzipping of DNA in a nanopore

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Published 30 November 2005 2006 EDP Sciences
, , Citation J. Mathé et al 2006 EPL 73 128 DOI 10.1209/epl/i2005-10368-7

0295-5075/73/1/128

Abstract

We study the unzipping dynamics of individual DNA hairpins using nanopore force spectroscopy at different voltage ramp rates and temperatures. At high ramp rates the critical unzipping voltage is proportional to log dot V, where dot V is the voltage ramp. At low ramp values we observe a crossover to another regime with a weaker dependence on dot V. Here we report on the dependence of these two regimes on temperature. Remarkably, the unzipping kinetics can be well described by a simple two-states model that predicts the existence of two asymptotic regimes: quasi-equilibrium unzipping at low-voltage ramps and irreversible unzipping at high ramp rates.

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10.1209/epl/i2005-10368-7